I've fixed the issue manually by using the Kloxo template file as the /etc/named.conf.
And there were some customer config that bind didn't like and i had to correct them.
Now all up and running.
Mustafa: For the future, please consider making such bigger changes in a new github branch and make a pull request (PR) so that we can test it for a while and you'll feedback from testers. That way we can avoid such downtime.
Our services were down over 8 hours today due to this! We are offering a cloud storage and have over 10k users.